CLI fails with warning messages

I tried to use the example ADaM CLI code from https://www.pinnacle21.com/projects/validator/community-cli, but it failed. Complete command-line output from PowerShell is shown at the bottom. To save reading, I've highlighted some messages that seem important. Can anybody suggest what might be wrong here? Thanks in advance for any help.

The worst-looking thing I saw was 

WARNING: Could not open/create prefs root node Software\JavaSoft\Prefs at root 0x80000002. Windows RegCreateKeyEx(...) returned error code 5.

I don't have the permissions to create registry keys. Is this going to be a dealbreaker?

Other highlights include:

13:47:42,995 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.groovy]
13:47:42,995 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]

 

log4j:WARN No appenders could be found for logger (com.amazonaws.AmazonWebServiceClient).
log4j:WARN Please initialize the log4j system properly.

13:47:43,223 |-WARN in ch.qos.logback.core.ConsoleAppender[STDOUT] - This appender no longer admits a layout as a sub-co
mponent, set an encoder instead.
13:47:43,223 |-WARN in ch.qos.logback.core.ConsoleAppender[STDOUT] - To ensure compatibility, wrapping your layout in La
youtWrappingEncoder.
13:47:43,223 |-WARN in ch.qos.logback.core.ConsoleAppender[STDOUT] - See also http://logback.qos.ch/codes.html#layoutIns
teadOfEncoder for details

2019-06-21 13:47:55 [main] WARN  net.pinnacle21.oce.utils.DataSources - 'config' folder or file is not found.
2019-06-21 13:47:55 [main] INFO  net.pinnacle21.oce.utils.DataSources - Found 'configs' folder in local dir C:\Users\rm1
132\Documents\Pinnacle 21 Community\configs. Will use it

Full log:

PS C:\Users\USER\Documents\Pinnacle 21 Community> java -jar p21-client-1.0.0.jar --engine.version="FDA 1903.1" --stand
ard=adam --standard.version=1.1 --source.sdtm="c:\sdtmpath" --source.adam = "C:\adampath" --source.define="C:\adampath\define.xml" --cdisc.ct.sdtm.version=2017-12-22 --cdisc.ct.
adam.version =2017-12-22 --meddra.version=19.0 --report="C:\Users\USER\Desktop\report.xlsx"
13:47:42,995 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.groovy]
13:47:42,995 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
13:47:42,995 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [jar:file:/C:/Use
rs/USER/Documents/Pinnacle%2021%20Community/p21-client-1.0.0.jar!/logback.xml]
13:47:43,006 |-INFO in ch.qos.logback.core.joran.spi.ConfigurationWatchList@9b1010 - URL [jar:file:/C:/Users/USER/Docu
ments/Pinnacle%2021%20Community/p21-client-1.0.0.jar!/logback.xml] is not of type file
13:47:43,096 |-INFO in ch.qos.logback.classic.joran.action.ConfigurationAction - debug attribute not set
13:47:43,106 |-INFO in ch.qos.logback.core.joran.action.DefinePropertyAction - About to instantiate property definer of
type [net.pinnacle21.oce.logging.JarNameDefiner]
13:47:43,106 |-INFO in ch.qos.logback.core.joran.action.DefinePropertyAction - Popping property definer for property nam
ed [jarName] from the object stack
13:47:43,160 |-INFO in ch.qos.logback.core.joran.action.DefinePropertyAction - About to instantiate property definer of
type [net.pinnacle21.oce.logging.LogLevelDefiner]
13:47:43,163 |-INFO in ch.qos.logback.core.joran.action.DefinePropertyAction - Popping property definer for property nam
ed [logLevel] from the object stack
13:47:43,163 |-INFO in ch.qos.logback.core.joran.action.DefinePropertyAction - About to instantiate property definer of
type [net.pinnacle21.oce.logging.LogAppendFlagDefiner]
13:47:43,163 |-INFO in ch.qos.logback.core.joran.action.DefinePropertyAction - Popping property definer for property nam
ed [appendFlag] from the object stack
13:47:43,163 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - About to instantiate appender of type [ch.qos.l
ogback.core.FileAppender]
13:47:43,168 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - Naming appender as [CLI-APPENDER]
13:47:43,183 |-INFO in ch.qos.logback.core.joran.action.NestedComplexPropertyIA - Assuming default type [ch.qos.logback.
classic.encoder.PatternLayoutEncoder] for [encoder] property
13:47:43,211 |-INFO in ch.qos.logback.core.FileAppender[CLI-APPENDER] - File property is set to [C:\Users\USER\Documen
ts\Pinnacle 21 Community\logs\p21-client-1.0.0]
13:47:43,213 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - About to instantiate appender of type [ch.qos.l
ogback.core.ConsoleAppender]
13:47:43,219 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - Naming appender as [STDOUT]
13:47:43,223 |-WARN in ch.qos.logback.core.ConsoleAppender[STDOUT] - This appender no longer admits a layout as a sub-co
mponent, set an encoder instead.
13:47:43,223 |-WARN in ch.qos.logback.core.ConsoleAppender[STDOUT] - To ensure compatibility, wrapping your layout in La
youtWrappingEncoder.
13:47:43,223 |-WARN in ch.qos.logback.core.ConsoleAppender[STDOUT] - See also http://logback.qos.ch/codes.html#layoutIns
teadOfEncoder for details
13:47:43,223 |-INFO in ch.qos.logback.classic.joran.action.RootLoggerAction - Setting level of ROOT logger to INFO
13:47:43,223 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [CLI-APPENDER] to L
ogger[ROOT]
13:47:43,224 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[
ROOT]
13:47:43,224 |-INFO in ch.qos.logback.classic.joran.action.ConfigurationAction - End of configuration.
13:47:43,224 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3708b3 - Registering current configuration as safe
 fallback point

SLF4J: net.pinnacle21.oce.utils.DataSources
SLF4J: The following set of substitute loggers may have been accessed
SLF4J: during the initialization phase. Logging calls during this
SLF4J: phase were not honored. However, subsequent logging calls to these
SLF4J: loggers will work as normally expected.
SLF4J: See also http://www.slf4j.org/codes.html#substituteLogger
Jun 21, 2019 1:47:43 PM java.util.prefs.WindowsPreferences <init>
WARNING: Could not open/create prefs root node Software\JavaSoft\Prefs at root 0x80000002. Windows RegCreateKeyEx(...) r
eturned error code 5.
2019-06-21 13:47:44 [main] INFO  net.pinnacle21.oce.model.input.Input - Use default value 2
log4j:WARN No appenders could be found for logger (com.amazonaws.AmazonWebServiceClient).
log4j:WARN Please initialize the log4j system properly.
log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for more info.
2019-06-21 13:47:45 [RxIoScheduler-2] INFO  net.bootstrap.core.AbstractCommand - command='cmd-aws-healthCheck', runTime=
436
2019-06-21 13:47:45 [RxIoScheduler-2] INFO  net.bootstrap.utils.S3Loader - Services are healthy
2019-06-21 13:47:45 [main] INFO  net.bootstrap.utils.S3Loader - Downloading from s3 p21-community-resources
2019-06-21 13:47:45 [RxIoScheduler-2] INFO  net.bootstrap.utils.S3Loader - Downloading from s3 p21-community-resources
2019-06-21 13:47:45 [main] INFO  net.bootstrap.core.AbstractCommand - command='cmd-aws-download', runTime=56
2019-06-21 13:47:45 [main] INFO  net.bootstrap.utils.Libs - Loading engine version 1511.5
2019-06-21 13:47:45 [main] INFO  net.bootstrap.core.AbstractCommand - command='cmd-aws-download', runTime=55
2019-06-21 13:47:45 [main] INFO  net.bootstrap.utils.Libs - Loading engine version 1903.1
2019-06-21 13:47:45 [main] INFO  n.p.oce.model.input.ParseResults - Loaded parameters |Command line: --engine.version=FD
A 1903.1 --standard=adam --standard.version=1.1 --source.sdtm=c:\sdtmpath --source.adam = C:\adampath --source.define=C:\adampath\define.xml --cdisc.ct.sdtm.version=2017-12-22 -
-cdisc.ct.adam.version =2017-12-22 --meddra.version=19.0 --report=C:\Users\USER\Desktop\report.xlsx|
2019-06-21 13:47:45 [main] INFO  net.pinnacle21.oce.utils.DataSources - Folder multi://sources contains XPT files. Setti
ng format to XPT by default
2019-06-21 13:47:45 [main] INFO  n.p.o.m.r.StandardRequestBuilder - Source format is determined as 'xport'
2019-06-21 13:47:45 [RxIoScheduler-2] INFO  net.bootstrap.core.AbstractCommand - command='cmd-aws-download', runTime=275

2019-06-21 13:47:46 [RxIoScheduler-2] INFO  net.bootstrap.utils.S3Loader - Downloading from s3 p21-community-resources
2019-06-21 13:47:46 [RxIoScheduler-4] INFO  net.bootstrap.core.AbstractCommand - command='cmd-aws-download', runTime=48
2019-06-21 13:47:46 [RxIoScheduler-4] INFO  net.bootstrap.utils.Libs - Loading engine version 1511.5
2019-06-21 13:47:46 [RxIoScheduler-3] INFO  net.bootstrap.core.AbstractCommand - command='cmd-aws-download', runTime=287

2019-06-21 13:47:46 [RxIoScheduler-4] INFO  net.bootstrap.core.AbstractCommand - command='cmd-aws-download', runTime=256

2019-06-21 13:47:46 [RxIoScheduler-4] INFO  net.bootstrap.utils.Libs - Loading engine version 1903.1
2019-06-21 13:47:46 [RxIoScheduler-5] INFO  net.bootstrap.core.AbstractCommand - command='cmd-aws-download', runTime=298

2019-06-21 13:47:55 [main] INFO  n.p.o.m.r.StandardRequestBuilder - Determine filter FDA from engine FDA
2019-06-21 13:47:55 [main] INFO  n.p.o.m.r.StandardRequestBuilder - Determined engine version 1903.1
2019-06-21 13:47:55 [main] INFO  n.p.o.m.r.ValidatorRequestBuilder - Build validator request
2019-06-21 13:47:55 [main] INFO  net.pinnacle21.oce.model.FormatType - Cannot determine output format type. Set to defau
lt 'excel'
2019-06-21 13:47:55 [main] INFO  net.pinnacle21.oce.model.FormatType - Failed to find format type for file 'report' and
extension 'xlsx'. Trying default 'excel'
2019-06-21 13:47:55 [main] INFO  net.pinnacle21.oce.model.FormatType - Output format type is determined as 'excel'
2019-06-21 13:47:55 [main] INFO  net.pinnacle21.oce.model.FormatType - Failed to find format type for file 'report' and
extension 'xlsx'. Trying default 'excel'
2019-06-21 13:47:55 [main] INFO  net.pinnacle21.oce.model.FormatType - Output format type is default as 'excel'
2019-06-21 13:47:55 [main] INFO  net.pinnacle21.oce.model.input.Input - Use default value 1000
2019-06-21 13:47:55 [main] INFO  n.p.o.m.r.ValidatorRequestBuilder - No output provided. Report URL will be written to s
tandard output
2019-06-21 13:47:55 [main] INFO  n.p.o.m.r.StandardRequestBuilder - Source format is determined as 'xport'
2019-06-21 13:47:55 [main] INFO  n.p.o.m.r.StandardRequestBuilder - Determine filter FDA from engine FDA
2019-06-21 13:47:55 [main] INFO  n.p.o.m.r.StandardRequestBuilder - Determined engine version 1903.1
2019-06-21 13:47:55 [main] INFO  net.pinnacle21.oce.utils.DataSources - Found 'lib' folder in local dir C:\Users\USER\
Documents\Pinnacle 21 Community\lib. Will use it
2019-06-21 13:47:55 [main] WARN  net.pinnacle21.oce.utils.DataSources - 'config' folder or file is not found.
2019-06-21 13:47:55 [main] INFO  net.pinnacle21.oce.utils.DataSources - Found 'configs' folder in local dir C:\Users\rm1
132\Documents\Pinnacle 21 Community\configs. Will use it
2019-06-21 13:47:55 [main] INFO  n.p.oce.model.input.ConfigInfo - Config 'C:\Users\USER\Documents\Pinnacle 21 Communit
y\configs' is a directory. Cannot parse for standard, version, and filter
2019-06-21 13:47:55 [main] INFO  n.pinnacle21.oce.utils.ResourceUtils - Looking for config file in folder=C:\Users\rm113
2\Documents\Pinnacle 21 Community\configs
2019-06-21 13:47:55 [main] INFO  n.pinnacle21.oce.utils.ResourceUtils - Checking config file=C:\Users\USER\Documents\P
innacle 21 Community\configs\ADaM-IG 1.1 (FDA).xml
2019-06-21 13:47:55 [main] INFO  n.p.oce.model.input.ConfigInfo - Config C:\Users\USER\Documents\Pinnacle 21 Community
\configs\ADaM-IG 1.1 (FDA).xml does not exist. Looking up in engine versioned folder C:\Users\USER\Documents\Pinnacle
21 Community\configs\1903.1
2019-06-21 13:47:55 [main] INFO  n.pinnacle21.oce.utils.ResourceUtils - Looking for config file in folder=C:\Users\rm113
2\Documents\Pinnacle 21 Community\configs\1903.1
2019-06-21 13:47:55 [main] INFO  n.pinnacle21.oce.utils.ResourceUtils - Checking config file=C:\Users\USER\Documents\P
innacle 21 Community\configs\1903.1\ADaM-IG 1.1 (FDA).xml
2019-06-21 13:47:55 [main] ERROR n.pinnacle21.oce.utils.ProcessUtils - CLI.4.1::Data source is invalid::Cannot run local
 validation. Data source='multi://sources' does not exist
net.pinnacle21.oce.exceptions.CLIException: Cannot run local validation. Data source='multi://sources' does not exist
        at net.pinnacle21.oce.model.request.ValidatorRequestBuilder.build(ValidatorRequestBuilder.java:128) ~[p21-client
-1.0.0.jar:1.0.0]
        at net.pinnacle21.oce.model.request.RequestType.lambda$static$1(RequestType.java:24) ~[p21-client-1.0.0.jar:1.0.
0]
        at net.pinnacle21.oce.model.request.RequestType.toRequest(RequestType.java:97) ~[p21-client-1.0.0.jar:1.0.0]
        at net.pinnacle21.oce.utils.InputUtils.from(InputUtils.java:51) ~[p21-client-1.0.0.jar:1.0.0]
        at net.pinnacle21.oce.utils.ProcessUtils.start(ProcessUtils.java:143) ~[p21-client-1.0.0.jar:1.0.0]
        at net.pinnacle21.oce.utils.ProcessUtils.startFromCommandLine(ProcessUtils.java:131) ~[p21-client-1.0.0.jar:1.0.
0]
        at net.pinnacle21.oce.utils.ProcessUtils.startFromCommandLine(ProcessUtils.java:102) ~[p21-client-1.0.0.jar:1.0.
0]
        at net.pinnacle21.oce.Main.main(Main.java:16) [p21-client-1.0.0.jar:1.0.0]
PS C:\Users\USER\Documents\Pinnacle 21 Community>