t Thierry
on

 

Hi,

I have strange messages when validating data from the command line with OC 2.0.1 (see below). For the last line, I think it is due to "IG.FA" being used in 2 places in the xml config files: replacing
<val:Prototype ItemGroupOID="IG.FA" KeyVariables="__OBJ"/>
with:
<val:Prototype ItemGroupOID="IG.FINDINGSABOUT" KeyVariables="__OBJ"/>
makes it disappear.

I do not understand the other messages: all these value lists and code lists are indeed present as ValueListDef in the define.xml, and if there was a problem, shouldn't it surface when validating define.xml rather than the data? Also, there is no MI domain in this submission... Maybe something is wrong in the command line invocation?

Thanks for your help.

-- Thierry

java -Xms256m -Xmx1024m -jar c:/programs/opencdisc/2.0/components/lib/validator-cli-2.0.1.jar
  -task=Validate
  -type=SDTM
  -source="C:/Studies/Sponsor/Study/Submission SDTM/*.xpt"
  -config="C:/Studies/Sponsor/Global/Data/opencdisc-config-2.0/SDTM 3.2.xml"
  -config:define="C:/Studies/Sponsor/Study/Submission SDTM/define.xml"
  -config:cdisc="2014-09-26"
  -config:meddra="16.1"
  -config:ndfrt="2014-11-03"
  -config:unii="2014-11-20"
  -report="C:/Studies/Sponsor/Study/Validation/sdtm-data-report.xlsx"
  -report:type=Excel
  -report:overwrite=yes

 Beginning validation, please wait...
The ItemDef it.CM.CMCAT contains a reference to the unknown value list vl.CM.CMCAT
The ItemDef it.CM.CMENDTC contains a reference to the unknown value list vl.CM.CMENDTC
The ItemDef it.CM.CMENRTPT contains a reference to the unknown value list vl.CM.CMENRTPT
The ItemDef it.CM.CMINDC contains a reference to the unknown value list vl.CM.CMINDC
The ItemDef it.CM.CMREFID contains a reference to the unknown value list vl.CM.CMREFID
The ItemDef it.CM.CMSCAT contains a reference to the unknown value list vl.CM.CMSCAT
The ItemDef it.CM.CMSTDTC contains a reference to the unknown value list vl.CM.CMSTDTC
The ItemDef it.CM.CMTRT contains a reference to the unknown value list vl.CM.CMTRT
The ItemDef it.DS.DSDECOD contains a reference to the unknown value list vl.DS.DSDECOD
The ItemDef it.DS.DSREFID contains a reference to the unknown value list vl.DS.DSREFID
The ItemDef it.DS.DSSTDTC contains a reference to the unknown value list vl.DS.DSSTDTC
The ItemDef it.DS.DSTERM contains a reference to the unknown value list vl.DS.DSTERM
The ItemDef it.FA.FAORRES contains a reference to the unknown value list vl.FA.FAORRES
The ItemDef it.FA.FASTRESC contains a reference to the unknown value list vl.FA.FASTRESC
The ItemDef it.IE.IEORRES contains a reference to the unknown value list vl.IE.IEORRES
The ItemDef it.LB.LBDTC contains a reference to the unknown value list vl.LB.LBDTC
The ItemDef it.LB.LBNAM contains a reference to the unknown value list vl.LB.LBNAM
The ItemDef it.LB.LBORNRHI contains a reference to the unknown value list vl.LB.LBORNRHI
The ItemDef it.LB.LBORNRLO contains a reference to the unknown value list vl.LB.LBORNRLO
The ItemDef it.LB.LBORRES contains a reference to the unknown value list vl.LB.LBORRES
The ItemDef it.LB.LBORRESU contains a reference to the unknown value list vl.LB.LBORRESU
The ItemDef it.MH.MHENRTPT contains a reference to the unknown value list vl.MH.MHENRTPT
The ItemDef it.MH.MHSTDTC contains a reference to the unknown value list vl.MH.MHSTDTC
The ItemDef it.MH.MHTERM contains a reference to the unknown value list vl.MH.MHTERM
The ItemDef it.PE.PEDTC contains a reference to the unknown value list vl.PE.PEDTC
The ItemDef it.PE.PEORRES contains a reference to the unknown value list vl.PE.PEORRES
The ItemDef it.PE.PESTAT contains a reference to the unknown value list vl.PE.PESTAT
The ItemDef it.PE.PESTRESC contains a reference to the unknown value list vl.PE.PESTRESC
The ItemDef it.PR.PRSCAT contains a reference to the unknown value list vl.PR.PRSCAT
The ItemDef it.PR.PRSTDTC contains a reference to the unknown value list vl.PR.PRSTDTC
The ItemDef it.PR.PRTRT contains a reference to the unknown value list vl.PR.PRTRT
The ItemDef it.RS.RSORRES contains a reference to the unknown value list vl.RS.RSORRES
The ItemDef it.RS.RSSTRESC contains a reference to the unknown value list vl.RS.RSSTRESC
The ItemDef it.SC.SCORRES contains a reference to the unknown value list vl.SC.SCORRES
The ItemDef it.SUPPAE.QVAL contains a reference to the unknown value list vl.SUPPAE.QVAL
The ItemDef it.SUPPCM.QVAL contains a reference to the unknown value list vl.SUPPCM.QVAL
The ItemDef it.SUPPDM.QVAL contains a reference to the unknown value list vl.SUPPDM.QVAL
The ItemDef it.SUPPMH.QVAL contains a reference to the unknown value list vl.SUPPMH.QVAL
The ItemDef it.SUPPPE.QVAL contains a reference to the unknown value list vl.SUPPPE.QVAL
The ItemDef it.SUPPPR.QVAL contains a reference to the unknown value list vl.SUPPPR.QVAL
The ItemDef it.SUPPRS.QVAL contains a reference to the unknown value list vl.SUPPRS.QVAL
The ItemDef it.TS.TSVAL contains a reference to the unknown value list vl.TS.TSVAL
The ItemDef it.TS.TSVAL1 contains a reference to the unknown value list vl.TS.TSVAL1
The ItemDef it.TS.TSVALCD contains a reference to the unknown value list vl.TS.TSVALCD
The ItemDef it.VS.VSORRES contains a reference to the unknown value list vl.VS.VSORRES
The ItemDef it.VS.VSORRESU contains a reference to the unknown value list vl.VS.VSORRESU
The ItemDef IT.MI.MITEST contains a reference to the unknown codelist CL.C89973.MITEST
The ItemDef IT.MI.MITESTCD contains a reference to the unknown codelist CL.C89974.MITESTCD
The ItemGroupDef named FA conflicts with a configuration prototype (oid: IG.FA). This shouldn't happen!
 The validation has completed.

Forums: Troubleshooting and Problems

s Sergiy
on April 14, 2015

Hi Thierry, 

It looks like something wrong with your define.xml file.

Regards, 

Sergiy

t Thierry
on April 26, 2015

Hi Sergiy,

As I said, the define file does not contain the MI domain, so for instance the message about "IT.MI.MITEST" must come from your own configuration files (my guess). I also checked the ValueLists, and they are OK, so again I suspect there is a mix-up with your configuration files. And as I said, if there were such problems, they would show when validating the define file, right?

It looks like something is wrong with your software. ;-)

Regards,

-- Thierry

d Dmitry
on April 27, 2015

A similar issue for 2.0.0 was discussed earlier: CLI validator output not showing all issues? In that case it was fixed by replacement of %System.CDISC CT.Version% with %System.CDISC.Version% in configurations files.

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