Forums: Define.xml
Hi Nitin,
Your codelist is incorrect. E.g., "Non-target Response" has NCI code "C94535", not "C96609" as specified in your define.xml.
Note, that there is no complain about "Overall Response", because its codelist is correct.
Kind Regards,
Sergiy
Hi Sergiy, codes have changed between versions 2013-06-28 and 2014-03-28. Still don't understand why the error for C20587 and C41184.
Anyways please add a way to specify code list version used.
Thanks,
Nitin.
Hi Nitin,
I can't find C20587 in CDISC CT. What version are you using?
Also, C41184 is inside the DOTEST (Device Properties Test Name) codelist, which is propably why you are getting an error.
Regards, Max
It's difficult to perform issue diagnostics without having source define.xml.
My guess is that you may be re-used the same Codelist OID = "CL.RSTEST" for other codelist.
I am using CT from 2013-06-28 and seems like this is causing problems as code values are different in 2014-03-28 version that is used by the validator. That's why we need an option to specify CT version in the validator.
Thanks,
Nitin
Nitin,
As a temporary solution you can replaced a "SDTM Terminology.odm.xml" file in "...\config\data" folder by Terminology version you used for your study ( http://evs.nci.nih.gov/ftp1/CDISC/SDTM/Archive/ ).
The file name needs to be exactly the same as original one, without date of version.
Regards,
Sergiy
Hi,
As I understand OpenCDISC 1.5 uses only SDTM CT for checks. When using it for ADaM CT codelists it will report this error.
There are very few ADaM codelists, so it can be easily checked manually or the codelists can be added to the xml file mentioned above. Anyway it will be nice if OpenCDISC can load ADaM CT xml file in the future.
Hi I am getting following errors for variable RSTEST using validator Vv1.5 for Definexml v2.0:
xpath Variables Values
//CodeList[@OID='CL.RSTEST']/EnumeratedItem[1]/Alias[1] @Name C20587
//CodeList[@OID='CL.RSTEST']/EnumeratedItem[1]/Alias[1] @Name C41184
//CodeList[@OID='CL.RSTEST']/EnumeratedItem[1]/Alias[1] @Name C96609
//CodeList[@OID='CL.RSTEST']/EnumeratedItem[1]/Alias[1] @Name C96637
Following is how codelist is defined in Define.xml
<CodeList OID="CL.RSTEST" Name="Tumor Response Assessment Test Name" DataType="text">
<EnumeratedItem CodedValue="Non-target Response">
<Alias Name="C96609" Context="nci:ExtCodeID"/>
</EnumeratedItem>
<EnumeratedItem CodedValue="Overall Response">
<Alias Name="C96613" Context="nci:ExtCodeID"/>
</EnumeratedItem>
<EnumeratedItem CodedValue="Target Response">
<Alias Name="C96637" Context="nci:ExtCodeID"/>
</EnumeratedItem>
<Alias Name="C96781" Context="nci:ExtCodeID"/>
</CodeList>